"""Parsers for KEGG pathways."""
import logging
from dabeplech.models.kegg import KeggPathwayModel
from dabeplech.parsers.kegg.base import BaseKeggParser
logging.basicConfig()
logger = logging.getLogger()
# class KeggPathwayKoParser(BaseKeggParser):
# model = KeggPathwayModel
# class KeggPathwayMapParser(BaseKeggParser):
# model = KeggPathwayModel
[docs]class KeggPathwayParser(BaseKeggParser):
"""Parser for KEGG pathway `plain text` result from KEGG API."""
model = KeggPathwayModel
def _handle_pathway_map(self, line, first=False):
self._simple_handling(line, "pathway_maps", first=first)
def _handle_rel_pathway(self, line, first=False):
self._simple_handling(line, "related_pathways", first=first)
def _handle_ko_pathway(self, line, **kwargs):
self.entry.ko_pathway = line.split(maxsplit=1)[-1].strip()